JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN5A_chr3_38543062_38654687	0/0	c0004	6051	32	5	4	20	0	3	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0005	6051	20	1	4	9	2	4	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0006	6051	18	3	1	13	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0007	6051	11	6	0	0	1	4	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0008	6051	7	6	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0009	6051	5	2	3	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	1/0	c0010	6051	4	0	1	0	1	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0011	6051	4	4	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0012	6051	4	4	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0013	6051	3	0	0	3	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0014	6051	3	2	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0015	6051	3	3	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0016	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0017	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0018	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0019	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0020	6051	2	0	0	1	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0021	6051	2	0	2	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0022	6051	2	0	0	2	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0023	6051	2	0	2	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0024	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0025	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0026	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0027	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0028	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0029	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0030	6051	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0031	6051	1	0	0	0	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0032	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0033	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0034	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0035	6051	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0036	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0037	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0038	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0039	6051	1	0	0	0	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0040	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0041	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0042	6051	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0043	6051	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0044	6051	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0045	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0046	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0047	6051	1	0	0	0	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0048	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0049	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0050	6051	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0051	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0052	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0053	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687