JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN9A_chr2_166190185_166380944	0/0	c0070	5967	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0071	5967	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCNM1_chr1_151161144_151175296	1/1	c0001	693	363	87	72	148	15	39	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	c0002	693	7	7	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	c0003	693	4	4	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	c0004	693	3	0	0	0	1	2	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	c0005	693	1	0	0	0	0	1	copy fasta	SCNM1	chr1	151161144	151175296
SCNN1A_chr12_6341847_6380563	0/1	c0001	2010	221	40	59	83	10	28	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	1/0	c0002	2010	96	4	13	67	3	8	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0003	2010	59	31	5	19	0	4	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0004	2010	10	10	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0005	2010	7	7	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0006	2010	7	0	0	5	0	2	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0007	2010	6	0	3	3	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0008	2010	5	0	3	0	1	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0009	2010	5	2	0	3	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0010	2010	5	0	0	5	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0011	2010	5	0	0	4	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0012	2010	4	0	0	4	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0013	2010	4	0	0	4	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0014	2010	4	0	0	4	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0015	2010	2	0	1	0	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0016	2010	1	0	0	0	1	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0018	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0019	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0020	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0021	2010	1	0	0	0	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0022	2010	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0023	2010	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0024	2010	1	0	0	0	1	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0025	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0026	2010	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0027	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0028	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	c0029	2010	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1B_chr16_23297302_23386294	0/0	c0001	1923	215	47	31	101	8	28	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	1/1	c0002	1923	40	2	20	2	4	10	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0003	1923	22	17	2	0	3	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0004	1923	6	5	1	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0005	1923	4	4	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0006	1923	3	0	0	3	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0007	1923	3	3	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0008	1923	3	3	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0009	1923	2	1	0	0	1	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0010	1923	1	0	0	1	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0011	1923	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0012	1923	1	0	1	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0013	1923	1	0	0	1	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0014	1923	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294