JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCNN1B_chr16_23297302_23386294	0/0	c0015	1923	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0016	1923	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	c0017	1923	1	0	1	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1D_chr1_1275436_1297025	1/1	c0001	2409	85	15	33	19	8	8	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0002	2409	54	0	6	43	0	5	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0003	2409	41	14	8	9	1	9	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0004	2409	29	2	3	23	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0005	2409	6	4	2	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0006	2409	5	4	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0007	2409	5	5	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0008	2409	5	4	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0009	2409	4	0	4	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0010	2409	4	0	2	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0011	2409	3	3	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0012	2409	3	0	0	0	2	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0013	2409	2	0	0	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0014	2409	2	0	0	1	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0015	2409	2	0	0	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0016	2409	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0017	2409	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0018	2409	2	0	0	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0019	2409	2	0	0	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0020	2409	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0021	2409	2	2	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0022	2409	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0023	2409	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0024	2409	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0025	2408	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0026	2409	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0027	2409	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0028	2409	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0029	2409	1	0	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0030	2428	1	0	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0031	2409	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0032	2409	1	0	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0033	2409	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0034	2409	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0035	2409	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0036	2409	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0037	2391	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0038	2409	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0039	2409	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0040	2409	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0041	2404	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0042	2409	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0043	2409	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0044	2409	1	1	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0045	2409	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0046	2409	1	0	0	0	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	c0047	2409	1	0	0	0	1	0	copy fasta	SCNN1D	chr1	1275436	1297025