JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCNN1G_chr16_23177745_23221883	1/0	c0001	1950	186	56	34	60	4	31	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0002	1950	60	4	20	27	2	7	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/1	c0003	1950	44	17	10	8	4	4	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0004	1950	6	1	2	1	2	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0005	1950	5	4	1	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0006	1950	3	3	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0007	1950	3	0	2	0	1	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0008	1950	2	0	1	0	1	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0009	1950	2	2	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0010	1950	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0011	1950	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0012	1950	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0013	1950	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0014	1950	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0015	1950	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0016	1950	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0017	1950	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	c0018	1950	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCO1_chr17_10667474_10702533	1/1	c0001	906	370	52	74	189	14	39	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0002	906	24	23	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0003	906	12	10	2	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0004	906	4	3	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0005	906	3	0	0	2	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0006	906	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0007	906	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	c0008	906	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO2_chr22_50518568_50530598	0/1	c0001	801	253	55	45	116	7	29	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	1/0	c0002	801	123	26	25	57	3	11	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0003	801	14	12	2	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0004	801	8	0	6	0	2	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0005	801	2	0	0	0	0	2	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0006	801	2	0	0	0	2	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0007	801	2	2	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0008	801	2	0	0	0	2	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0009	801	1	1	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0010	801	1	1	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0011	801	1	1	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	c0012	801	1	0	0	1	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCOC_chr4_140368646_140390728	1/1	c0001	249	418	94	80	182	16	44	copy fasta	SCOC	chr4	140368646	140390728
SCP2D1_chr20_18808783_18819378	1/1	c0001	471	367	57	71	185	17	35	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	c0002	471	69	33	12	11	1	12	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	c0003	471	12	4	3	4	0	1	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	c0004	471	2	0	2	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	c0005	471	2	2	0	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	c0006	471	1	1	0	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	c0007	461	1	1	0	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2_chr1_52922276_53056698	1/1	c0001	1644	165	33	28	78	5	19	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	c0002	1644	48	11	1	34	1	1	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	c0003	1644	47	28	10	7	0	2	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	c0004	1644	13	13	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698