JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCP2_chr1_52922276_53056698	0/0	c0005	1644	3	3	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	c0006	1644	2	0	2	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	c0007	1644	1	0	1	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	c0008	1644	1	0	0	1	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCPEP1_chr17_56973131_57011768	1/1	c0001	1359	345	94	57	146	9	37	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	c0002	1359	24	2	13	1	5	3	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	c0003	1359	4	0	0	4	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	c0004	1359	3	0	0	3	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	c0005	1359	2	0	0	2	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	c0006	1359	1	1	0	0	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	c0007	1359	1	1	0	0	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCRG1_chr4_173379701_173404116	1/1	c0001	297	379	98	66	159	14	40	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	c0002	286	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRIB_chr8_143785925_143820773	0/0	c0001	4968	112	8	29	42	9	24	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0002	4968	105	10	15	69	5	6	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0003	4968	16	10	1	4	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0004	4968	15	15	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0005	4968	10	0	0	8	0	2	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0006	4968	9	9	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/1	c0007	4968	7	0	1	3	0	2	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0008	4968	5	4	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0009	4968	5	1	4	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0010	4968	5	0	4	0	1	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0011	4968	5	5	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0012	4968	4	4	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0013	4968	4	4	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0014	4968	4	0	0	4	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0015	4969	3	0	1	1	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0016	4968	3	0	1	0	2	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0017	4968	3	0	0	3	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0018	4968	3	0	0	3	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0019	4968	3	0	0	3	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0020	4968	2	0	1	0	1	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0021	4968	2	1	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0022	4968	2	0	0	2	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0023	4968	2	0	2	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0024	4968	2	0	0	2	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0025	4968	2	1	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0026	4968	2	2	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0027	4968	2	0	0	2	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0028	4968	2	2	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0029	4968	2	2	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0030	4968	2	0	2	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0031	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0032	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0033	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0034	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0035	4968	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0036	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0037	4969	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773