JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCRIB_chr8_143785925_143820773	0/0	c0038	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0039	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0040	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0041	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0042	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0043	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0044	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0045	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0046	4969	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0047	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0048	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0049	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0050	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0051	4969	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0052	4969	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0053	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0054	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0055	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0056	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0057	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0058	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0059	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0060	4969	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0061	4969	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0062	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0063	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0064	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0065	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0066	4968	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0067	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0068	4968	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0069	4968	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0070	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0071	4968	1	0	0	0	0	1	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0072	4968	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0073	4969	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	c0074	4968	1	1	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRN1_chr7_29915109_29994801	1/1	c0001	1245	237	64	51	85	13	22	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	c0002	1245	31	10	3	17	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	c0003	1245	2	1	0	0	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	c0004	1245	1	1	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	c0005	1245	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	c0006	1245	1	0	0	0	1	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	c0007	1245	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN2_chr17_47832692_47846273	0/1	c0001	1278	341	73	61	151	14	41	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	1/0	c0002	1278	18	0	15	1	1	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0003	1278	7	4	2	0	0	1	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0004	1278	7	6	0	1	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0005	1278	6	5	1	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0006	1278	4	2	1	0	1	0	copy fasta	SCRN2	chr17	47832692	47846273