JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCRN2_chr17_47832692_47846273	0/0	c0007	1278	3	3	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0008	1278	2	0	0	0	0	2	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0009	1278	2	2	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0010	1278	2	2	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0011	1278	2	1	1	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0012	1278	1	1	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0013	1278	1	0	1	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0014	1278	1	1	0	0	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	c0015	1278	1	0	0	1	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN3_chr2_174390730_174434575	1/0	c0001	1275	234	79	39	80	7	28	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0002	1262	72	4	10	45	5	8	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0003	1275	29	1	21	0	4	3	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/1	c0004	1262	15	0	5	0	2	7	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0005	1275	4	4	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0006	1275	3	0	2	0	0	1	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0007	1275	2	0	0	2	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0008	1262	1	1	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0009	1275	1	0	0	1	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0010	1275	1	1	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0011	1275	1	0	1	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	c0012	1275	1	0	0	0	0	1	copy fasta	SCRN3	chr2	174390730	174434575
SCRT1_chr8_144325565_144341482	1/1	c0001	1047	379	86	76	155	18	42	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	c0002	1047	13	4	2	4	0	3	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	c0003	1047	3	1	2	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	c0004	1047	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	c0005	1047	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	c0006	1047	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT2_chr20_656596_680802	1/1	c0001	924	449	93	80	213	15	46	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	c0002	924	6	1	2	0	1	2	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	c0003	924	1	0	0	1	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	c0004	924	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	c0005	924	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCTR_chr2_119434843_119529483	0/0	c0001	1323	218	62	45	77	9	25	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	1/1	c0002	1323	45	13	11	11	0	8	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0003	1323	4	0	3	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0004	1323	4	4	0	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0005	1323	4	4	0	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0006	1323	3	2	1	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0007	1323	2	0	0	0	0	2	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0008	1323	2	0	0	2	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0009	1323	1	0	0	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0010	1323	1	0	0	1	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0011	1323	1	0	0	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0012	1323	1	0	0	0	1	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0013	1323	1	0	1	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0014	1323	1	1	0	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0015	1323	1	0	0	1	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	c0016	1323	1	0	1	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCT_chr11_621309_632181	0/1	c0001	366	398	89	79	165	16	48	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	c0002	366	4	3	1	0	0	0	copy fasta	SCT	chr11	621309	632181