JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATM_chr11_108218067_108374102	0/0	c0012	9171	4	1	0	2	1	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0013	9171	3	2	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0014	9171	2	0	1	0	1	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0015	9171	2	2	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0016	9171	2	0	1	0	1	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0017	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0018	9171	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0019	9171	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0020	9171	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0021	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0022	9171	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0023	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0024	9171	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0025	9171	1	0	0	0	0	1	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0026	9171	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0027	9171	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0028	9171	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0029	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0030	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0031	9171	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0032	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0033	9171	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0034	9171	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0035	9171	1	0	0	0	0	1	copy fasta	ATM	chr11	108218067	108374102
ATN1_chr12_6922959_6947321	1/0	c0001	3573	76	3	18	36	5	13	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0002	3558	44	1	2	36	2	3	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0003	3564	33	21	2	4	0	6	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0004	3579	29	0	2	25	0	2	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0005	3567	28	25	2	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0006	3582	22	0	0	21	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/1	c0007	3552	17	1	5	4	3	3	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0008	3561	16	3	2	11	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0009	3576	14	2	7	1	1	3	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0010	3576	14	0	1	13	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0011	3573	14	6	4	0	1	3	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0012	3570	14	5	1	0	0	8	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0013	3567	12	11	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0014	3585	8	1	0	7	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0015	3567	7	0	4	3	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0016	3555	7	5	0	1	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0017	3588	4	0	0	3	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0018	3549	4	0	0	4	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0019	3570	4	3	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0020	3555	3	0	0	3	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0021	3582	3	0	0	2	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0022	3573	3	0	2	0	1	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0023	3564	3	0	3	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0024	3558	2	0	2	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0025	3594	2	0	0	2	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0026	3582	2	0	0	2	0	0	copy fasta	ATN1	chr12	6922959	6947321