JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCT_chr11_621309_632181	0/0	c0003	366	4	4	0	0	0	0	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	c0004	369	3	1	0	2	0	0	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	c0005	366	1	1	0	0	0	0	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	c0006	366	1	0	0	1	0	0	copy fasta	SCT	chr11	621309	632181
SCUBE1_chr22_43192280_43348372	0/0	c0001	2967	60	3	21	25	4	7	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/1	c0002	2967	50	14	3	28	2	2	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0003	2967	24	2	15	0	3	4	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0004	2967	14	6	0	5	0	3	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0005	2967	10	0	3	3	1	3	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0006	2967	8	3	3	0	1	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0007	2967	8	0	0	8	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0008	2967	6	4	0	0	0	2	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0009	2967	6	6	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0010	2967	5	4	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0011	2967	5	1	2	0	1	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0012	2967	4	1	3	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0013	2967	4	0	0	3	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0014	2967	4	4	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0015	2967	4	0	0	4	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0016	2967	4	3	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0017	2967	3	0	0	3	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0018	2967	3	2	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0019	2967	3	1	2	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0020	2967	3	3	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0021	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0022	2967	2	0	1	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0023	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0024	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0025	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0026	2967	2	0	2	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0027	2967	2	0	0	0	0	2	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0028	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0029	2967	2	0	0	2	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0030	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0031	2967	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0032	2967	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0033	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0034	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0035	2967	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0036	2967	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0037	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0038	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0039	2967	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0040	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0041	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0042	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0043	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0044	2967	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0045	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0046	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372