JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCUBE1_chr22_43192280_43348372	0/0	c0047	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0048	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0049	2967	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	1/0	c0050	2967	1	0	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0051	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0052	2967	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0053	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0054	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0055	2967	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0056	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0057	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0058	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0059	2967	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0060	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	c0061	2967	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE2_chr11_9014476_9096599	1/0	c0001	3087	100	7	20	57	6	9	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/1	c0002	3084	73	16	18	31	2	5	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0003	3084	62	36	17	0	3	6	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0004	3087	22	0	3	13	2	4	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0005	3084	21	1	1	17	0	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0006	3084	15	1	0	7	0	7	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0007	3087	12	1	1	7	1	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0008	3084	8	5	0	3	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0009	3084	6	6	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0010	3084	4	4	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0011	3084	3	0	1	0	0	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0012	3084	3	1	1	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0013	3084	2	0	0	2	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0014	3084	2	0	2	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0015	3087	2	2	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0016	3087	2	0	0	2	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0017	3087	2	0	0	2	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0018	3084	1	0	0	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0019	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0020	3084	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0021	3084	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0022	3084	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0023	3084	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0024	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0025	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0026	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0027	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0028	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0029	3084	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0030	3087	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0031	3087	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0032	3087	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0033	3087	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0034	3087	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	c0035	3087	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599