JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCUBE2_chr11_9014476_9096599	0/0	c0036	3087	1	0	0	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE3_chr6_35208956_35258079	1/1	c0001	2982	261	74	51	100	8	26	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0002	2982	8	0	0	8	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0003	2982	8	0	0	8	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0004	2982	3	1	2	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0005	2982	2	2	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0006	2982	2	0	1	0	0	1	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0007	2982	1	0	0	0	0	1	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0008	2982	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0009	2982	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0010	2982	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0011	2982	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	c0012	2982	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCX_chr8_144261453_144273481	1/1	c0001	606	427	94	80	189	18	44	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	c0002	606	5	5	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	c0003	603	4	0	0	4	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	c0004	606	1	0	1	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	c0005	606	1	0	0	1	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	c0006	606	1	0	1	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	c0007	606	1	1	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCYGR1_chr2_227382683_227392949	0/1	c0001	267	136	23	31	60	7	14	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0002	276	133	19	18	77	2	17	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	1/0	c0003	267	116	20	22	53	6	14	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0004	258	39	23	4	11	0	1	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0005	288	14	0	3	8	1	2	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0006	267	7	7	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0007	276	3	3	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0008	258	2	2	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0009	267	1	0	0	0	0	1	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0010	267	1	1	0	0	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0011	258	1	0	0	1	0	0	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR1_chr2_227382683_227392949	0/0	c0012	267	1	0	0	0	0	1	copy fasta	SCYGR1	chr2	227382683	227392949
SCYGR2_chr2_227593893_227604255	0/0	c0001	363	128	27	22	65	6	8	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0002	375	104	14	20	62	3	5	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/1	c0003	327	93	6	9	63	2	12	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0004	327	31	13	7	11	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0005	315	25	0	7	9	1	8	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0006	375	23	21	2	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0007	363	17	0	8	7	1	1	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0008	363	15	0	1	1	2	11	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0009	369	5	4	1	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0010	366	4	4	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0011	315	3	0	3	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0012	399	3	3	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0013	375	2	0	2	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0014	363	2	2	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0015	387	2	2	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0016	363	2	0	0	2	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0017	315	1	0	0	0	0	1	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0018	315	1	0	0	0	1	0	copy fasta	SCYGR2	chr2	227593893	227604255