JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCYGR2_chr2_227593893_227604255	0/0	c0019	315	1	1	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0020	315	1	0	1	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0021	363	1	1	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0022	351	1	0	0	1	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0023	387	1	1	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0024	411	1	1	0	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0025	351	1	0	1	0	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR2_chr2_227593893_227604255	0/0	c0026	363	1	0	0	1	0	0	copy fasta	SCYGR2	chr2	227593893	227604255
SCYGR3_chr2_227609538_227619840	0/0	c0001	303	176	35	29	79	7	26	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0002	303	115	9	18	72	2	14	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0003	303	92	2	24	53	4	9	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0004	291	34	33	1	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0005	303	28	6	3	17	1	1	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0006	303	5	4	0	1	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0007	303	5	5	0	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0008	291	3	2	1	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0009	315	2	2	0	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR3_chr2_227609538_227619840	0/0	c0010	291	2	2	0	0	0	0	copy fasta	SCYGR3	chr2	227609538	227619840
SCYGR4_chr2_227612498_227622815	1/0	c0001	318	189	29	29	103	5	22	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/1	c0002	318	169	40	33	69	6	20	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0003	294	31	23	2	1	0	5	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0004	318	24	5	3	14	1	1	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0005	318	22	0	4	18	0	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0006	306	18	0	0	13	3	2	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0007	318	2	2	0	0	0	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0008	318	1	0	1	0	0	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0009	318	1	0	0	0	1	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR4_chr2_227612498_227622815	0/0	c0010	318	1	1	0	0	0	0	copy fasta	SCYGR4	chr2	227612498	227622815
SCYGR5_chr2_227661804_227672061	1/1	c0001	258	308	44	42	176	9	35	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0002	258	34	16	9	0	4	5	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0003	258	28	5	9	14	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0004	258	26	2	9	5	1	9	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0005	258	26	12	10	0	3	1	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0006	291	15	13	2	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0007	258	8	0	0	8	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0008	258	4	2	1	1	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0009	258	3	0	0	3	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0010	258	1	1	0	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0011	171	1	0	1	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0012	207	1	0	0	0	1	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0013	258	1	0	0	1	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0014	258	1	1	0	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0015	258	1	0	1	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0016	258	1	0	1	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR5_chr2_227661804_227672061	0/0	c0017	258	1	0	1	0	0	0	copy fasta	SCYGR5	chr2	227661804	227672061
SCYGR6_chr2_227719440_227729757	0/0	c0001	318	205	22	32	130	6	15	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0002	318	97	26	27	29	4	11	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0003	300	35	18	0	17	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0004	318	34	1	9	8	2	14	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0005	318	18	1	11	1	4	1	copy fasta	SCYGR6	chr2	227719440	227729757