JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCYGR6_chr2_227719440_227729757	0/0	c0006	336	13	0	0	13	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0007	318	11	10	1	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0008	318	7	7	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0009	318	6	1	1	2	0	2	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0010	300	3	3	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0011	366	2	1	1	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0012	318	2	0	0	2	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0013	300	2	0	1	0	0	1	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0014	318	2	0	0	1	0	1	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0015	336	2	0	0	2	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0016	372	2	0	0	2	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0017	330	2	2	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0018	318	1	1	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0019	318	1	0	0	1	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0020	318	1	0	0	1	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0021	318	1	1	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0022	300	1	0	0	1	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0023	336	1	0	1	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0024	300	1	1	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0025	336	1	0	0	1	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0026	318	1	1	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/1	c0027	300	1	0	0	0	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0028	372	1	0	0	0	0	1	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR6_chr2_227719440_227729757	0/0	c0029	300	1	0	0	1	0	0	copy fasta	SCYGR6	chr2	227719440	227729757
SCYGR7_chr2_227723335_227733625	1/1	c0001	291	210	33	29	126	8	12	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0002	291	62	6	12	19	3	22	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0003	291	44	8	5	30	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0004	291	29	17	3	8	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0005	291	24	6	11	0	4	3	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0006	291	15	2	11	0	0	2	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0007	291	10	0	0	10	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0008	291	10	9	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0009	288	6	5	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0010	291	6	0	0	5	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0011	291	5	0	0	5	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0012	291	5	0	5	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0013	291	3	0	0	3	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0014	291	3	0	2	0	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0015	357	3	0	0	3	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0016	279	2	0	0	1	1	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0017	291	2	2	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0018	291	1	0	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0019	291	1	0	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0020	291	1	0	0	0	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0021	270	1	0	0	1	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0022	288	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0023	291	1	0	0	1	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0024	378	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0025	291	1	0	0	0	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0026	291	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625