JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDC2_chr8_96488813_96616790	0/0	c0006	606	3	0	0	3	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	c0007	606	1	0	0	0	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	c0008	606	1	0	0	0	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC3_chr1_30864466_30913758	1/0	c0001	1329	153	41	34	53	7	17	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0002	1329	72	0	10	54	1	7	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0003	1329	58	31	12	9	1	5	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0004	1329	32	0	6	26	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0005	1329	23	3	6	2	1	11	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0006	1329	6	0	0	3	0	3	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/1	c0007	1329	4	0	2	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0008	1311	3	3	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0009	1329	3	3	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0010	1329	3	0	3	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0011	1329	3	0	0	1	2	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0012	1329	3	0	2	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0013	1329	2	2	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0014	1329	2	0	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0015	1329	2	0	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0016	1329	2	0	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0017	1311	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0018	1329	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0019	1329	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0020	1329	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0021	1329	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0022	1329	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0023	1329	1	0	0	0	1	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0024	1329	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0025	1329	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0026	1329	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0027	1329	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0028	1329	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0029	1329	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0030	1329	1	0	0	0	1	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	c0031	1329	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC4_chr20_45320288_45353424	1/0	c0001	597	256	69	48	101	9	28	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/1	c0002	597	150	22	22	83	5	17	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	c0003	597	7	0	0	7	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	c0004	597	2	0	0	2	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	c0005	597	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	c0006	597	1	0	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	c0007	597	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDCBP2_chr20_1304909_1334139	0/1	c0001	879	277	45	28	166	7	30	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0002	879	66	18	14	19	7	8	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0003	879	44	17	16	5	0	6	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0004	879	14	1	11	0	1	1	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	1/0	c0005	879	10	8	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0006	879	3	0	0	0	1	2	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0007	879	3	0	0	2	0	1	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0008	879	2	1	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0009	879	2	2	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139