JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDCBP2_chr20_1304909_1334139	0/0	c0010	879	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0011	879	1	0	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0012	879	1	0	0	1	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0013	879	1	0	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0014	879	1	0	0	1	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0015	879	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0016	879	1	0	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0017	879	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	c0018	879	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP_chr8_58548261_58587858	1/1	c0001	897	371	83	62	177	13	34	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	c0002	897	9	0	0	9	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	c0003	897	3	3	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	c0004	897	2	0	0	2	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	c0005	897	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	c0006	897	1	0	0	0	1	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	c0007	897	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCCAG8_chr1_243251041_243505091	0/0	c0001	2142	82	48	15	12	4	3	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/1	c0002	2142	50	6	14	16	0	13	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0003	2142	45	10	10	8	1	16	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0004	2142	6	2	2	2	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0005	2142	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0006	2142	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0007	2142	1	0	1	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0008	2142	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0009	2142	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	c0010	2142	1	0	0	0	1	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDE2_chr1_225977702_226004343	1/1	c0001	1356	371	88	68	156	16	41	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0002	1356	15	0	0	15	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0003	1356	6	6	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0004	1356	3	1	1	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0005	1356	1	1	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0006	1356	1	0	1	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0007	1356	1	0	0	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0008	1356	1	0	0	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0009	1356	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0010	1356	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	c0011	1356	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDF2L1_chr22_21637302_21649299	1/1	c0001	666	418	88	79	186	18	45	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0002	666	3	2	0	0	0	1	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0003	666	2	2	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0004	666	2	2	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0005	666	1	1	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0006	666	1	0	0	1	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0007	666	1	1	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0008	666	1	0	1	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	c0009	666	1	0	0	1	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2_chr17_28643346_28666906	1/1	c0001	636	390	86	73	181	8	40	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	c0002	636	5	4	1	0	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	c0003	636	1	1	0	0	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	c0004	636	1	1	0	0	0	0	copy fasta	SDF2	chr17	28643346	28666906