JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDF2_chr17_28643346_28666906	0/0	c0005	636	1	0	0	1	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF4_chr1_1211931_1237001	0/1	c0001	1068	364	81	62	165	14	41	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0002	1068	11	1	2	3	2	3	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	1/0	c0003	1068	9	0	6	0	2	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0004	1068	8	6	2	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0005	1068	2	2	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0006	1068	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0007	1068	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0008	1068	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0010	1068	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	c0011	1068	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDHAF1_chr19_35990188_36001312	0/1	c0001	348	378	90	72	161	10	44	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	c0002	348	12	6	4	0	0	2	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	c0003	348	1	0	0	1	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	1/0	c0004	348	1	0	0	0	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF2_chr11_61425124_61451733	1/1	c0001	501	238	90	46	62	8	30	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF3_chr7_97112698_97186763	1/1	c0001	378	381	77	75	173	14	40	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	c0002	378	17	16	0	1	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	c0003	378	3	0	1	0	0	2	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	c0004	378	1	1	0	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF4_chr6_70561930_70594569	1/1	c0001	327	269	60	48	118	12	29	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0002	327	68	13	16	29	4	6	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0003	327	18	16	2	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0004	327	7	0	3	4	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0005	327	4	4	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0006	327	2	0	1	0	0	1	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0007	327	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	c0008	327	1	0	0	1	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHA_chr5_213320_262082	0/1	c0001	1995	118	2	25	60	8	22	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	1/0	c0002	1995	118	7	23	68	3	16	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0003	1995	6	0	3	2	0	1	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0004	1995	4	0	0	4	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0005	1995	4	4	0	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0006	1995	4	0	2	0	0	2	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0007	1995	3	0	0	3	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0008	1995	2	0	0	2	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0009	1995	2	0	0	0	1	1	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0010	1995	1	0	1	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0011	1995	1	0	0	1	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0012	1995	1	0	0	1	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0013	1995	1	0	0	1	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	c0014	1995	1	1	0	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHB_chr1_17013722_17059032	0/1	c0001	843	342	78	61	160	13	29	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	1/0	c0002	843	11	5	2	3	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	c0003	843	7	7	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	c0004	843	3	0	1	0	1	1	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	c0005	843	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	c0006	843	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	c0007	843	1	0	0	1	0	0	copy fasta	SDHB	chr1	17013722	17059032