JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATN1_chr12_6922959_6947321	0/0	c0027	3573	2	0	0	0	0	2	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0028	3558	2	0	1	0	1	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0029	3570	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0030	3573	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0031	3573	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0032	3603	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0033	3597	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0034	3591	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0035	3588	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0036	3585	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0037	3582	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0038	3582	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0039	3579	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0040	3573	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0041	3570	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0042	3567	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0043	3564	1	0	0	0	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0044	3561	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0045	3558	1	0	0	0	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0046	3558	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0047	3546	1	0	0	0	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0048	3537	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0049	3573	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0050	3552	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0051	3585	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0052	3582	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	c0053	3564	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATOH1_chr4_93823753_93835964	1/1	c0001	1065	449	87	83	214	17	46	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0002	1065	2	1	0	0	1	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0003	1065	2	2	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0006	1065	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	c0008	1065	1	0	1	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH7_chr10_68225595_68237113	1/1	c0001	459	384	95	70	159	18	40	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	c0002	459	1	1	0	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	c0003	459	1	0	0	1	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH8_chr2_85748991_85796383	0/1	c0001	966	150	7	35	84	6	17	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	1/0	c0002	966	114	22	20	41	12	18	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0003	966	71	33	4	30	0	4	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0004	966	11	11	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0005	966	6	5	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0006	963	6	6	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0007	966	5	0	0	5	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0008	966	3	3	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0009	966	2	0	0	2	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0010	966	2	2	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0011	966	2	0	2	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0012	966	2	2	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383