JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDHB_chr1_17013722_17059032	0/0	c0008	843	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	c0009	843	1	1	0	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHC_chr1_161309381_161368206	1/1	c0001	510	325	85	46	141	12	39	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	c0002	510	2	2	0	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	c0003	510	1	0	0	1	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	c0004	510	1	0	0	0	0	1	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	c0005	510	1	1	0	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHD_chr11_112081873_112100794	1/1	c0001	480	342	58	72	166	12	32	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	c0002	480	34	33	1	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	c0003	480	5	5	0	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	c0004	480	3	0	3	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	c0005	480	2	0	2	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	c0006	480	1	0	0	1	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	c0007	480	1	0	0	1	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDK1_chr7_3296252_4274000	0/0	c0001	6642	4	1	1	1	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0002	6642	3	1	1	0	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0003	6642	3	0	1	2	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0004	6642	2	1	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0005	6642	2	0	0	0	0	2	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0006	6642	2	0	1	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0007	6642	2	0	2	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0008	6642	2	1	0	0	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0009	6642	2	0	0	0	0	2	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0010	6642	2	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0011	6642	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0012	6642	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0013	6642	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0014	6642	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0015	6642	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0016	6642	2	0	1	0	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0017	6642	2	2	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0018	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0019	6642	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0020	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0021	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0022	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0023	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0024	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0025	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0026	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0027	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0028	6642	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0029	6642	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0030	6642	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0031	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0032	6642	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0033	6642	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0034	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0035	6642	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0036	6642	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000