JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
SDK1_chr7_3296252_4274000	0/0	c0037	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0038	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0039	6642	1	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0040	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0041	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0042	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0043	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0044	6642	1	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0045	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0046	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0047	6642	1	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0048	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0049	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0050	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0051	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0052	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0053	6642	1	0	0	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0054	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0055	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0056	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0057	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0058	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0059	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0060	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0061	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0062	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0063	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0064	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0065	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0066	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0067	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0068	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0069	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0070	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0071	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0072	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0073	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0074	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0075	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0076	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0077	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0078	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0079	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0080	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0081	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0082	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0083	6642	1	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0084	6642	1	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0085	6642	1	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0086	6642	1	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000