JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDK1_chr7_3296252_4274000	0/0	c0087	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0088	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0089	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0090	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0091	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0092	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0093	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0094	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	c0095	6642	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK2_chr17_73329384_73649445	0/0	c0001	6519	13	0	4	7	1	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0002	6519	9	4	1	3	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	1/0	c0003	6519	7	3	1	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0004	6519	6	1	0	5	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0005	6519	6	5	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/1	c0006	6519	6	2	1	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0007	6519	5	1	4	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0008	6519	5	3	1	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0009	6519	5	1	0	3	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0010	6519	5	3	0	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0011	6519	4	4	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0012	6519	4	4	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0013	6519	4	0	1	0	1	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0014	6519	3	0	0	3	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0015	6519	3	2	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0016	6519	3	0	1	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0017	6519	3	0	2	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0018	6519	3	3	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0019	6519	2	2	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0020	6519	2	0	2	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0021	6519	2	0	0	1	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0022	6519	2	0	0	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0023	6519	2	0	1	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0024	6519	2	0	0	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0025	6519	2	2	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0026	6519	2	2	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0027	6519	2	1	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0028	6519	2	1	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0029	6519	2	0	0	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0030	6519	2	0	2	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0031	6519	2	0	2	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0032	6519	2	0	0	1	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0033	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0034	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0035	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0036	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0037	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0038	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0039	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0040	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0041	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445