JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDK2_chr17_73329384_73649445	0/0	c0042	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0043	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0044	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0045	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0046	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0047	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0048	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0049	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0050	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0051	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0052	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0053	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0054	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0055	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0056	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0057	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0058	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0059	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0060	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0061	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0062	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0063	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0064	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0065	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0066	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0067	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0068	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0069	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0070	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0071	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0072	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0073	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0074	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0075	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0076	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0077	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0078	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0079	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0080	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0081	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0082	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0083	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0084	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0085	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0086	6519	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0087	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0088	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0089	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0090	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0091	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445