JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDK2_chr17_73329384_73649445	0/0	c0092	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0093	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0094	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0095	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0096	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0097	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0098	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0099	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0100	6519	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0101	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0102	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0103	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0104	6519	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0105	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0106	6519	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0107	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0108	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0109	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0110	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0111	6519	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0112	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0113	6519	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	c0114	6519	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDR16C5_chr8_56295005_56325175	1/1	c0001	930	391	91	82	166	10	40	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	c0002	930	5	2	0	3	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	c0003	930	1	1	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	c0004	903	1	0	0	1	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR39U1_chr14_24434766_24447776	0/1	c0001	882	327	32	63	179	13	39	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	1/0	c0002	882	62	42	5	8	2	4	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0003	882	48	0	4	42	0	2	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0004	882	9	8	1	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0005	882	7	7	0	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0006	882	3	0	0	3	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0007	882	2	0	2	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0008	882	1	0	0	0	1	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0009	882	1	0	0	0	0	1	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0010	882	1	0	1	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	0/0	c0011	882	1	1	0	0	0	0	copy fasta	SDR39U1	chr14	24434766	24447776
SDR42E1_chr16_81983855_82016470	1/1	c0001	1182	313	35	64	158	16	38	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0002	1182	40	28	5	7	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0003	1182	17	16	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0004	1182	14	1	5	0	1	7	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0005	1182	10	0	0	10	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0006	1182	8	8	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0007	1182	7	7	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0008	1182	2	0	0	2	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0009	1182	1	0	0	0	1	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0010	1182	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0011	1182	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0012	1182	1	0	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470