JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDR42E1_chr16_81983855_82016470	0/0	c0013	1182	1	0	0	0	0	1	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0014	1182	1	0	0	1	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0015	1182	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0016	1182	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	c0017	1182	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E2_chr16_22157506_22196751	0/0	c0001	1269	193	64	20	85	3	21	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	1/1	c0002	1269	70	3	26	24	3	12	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0003	1269	68	9	12	40	0	7	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0004	1269	7	7	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0005	1269	6	0	1	5	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0006	1269	3	2	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0007	1269	2	0	2	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0008	1269	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0009	1269	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0010	1269	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0011	1269	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0012	1269	1	0	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0013	1269	1	0	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	c0014	1269	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR9C7_chr12_56918133_56939408	1/1	c0001	942	381	78	66	184	16	35	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0002	942	30	0	3	27	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0003	942	6	6	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0004	942	6	6	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0005	942	2	2	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0006	942	1	1	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0007	942	1	0	1	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0008	942	1	0	0	0	0	1	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0009	942	1	0	0	1	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	c0010	942	1	1	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDSL_chr12_113417380_113443276	1/1	c0001	990	254	68	53	92	16	23	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0002	990	14	0	14	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0003	990	9	9	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0004	990	6	4	1	1	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0005	990	3	0	1	0	0	2	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0006	990	2	0	0	2	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0007	990	2	2	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0008	1013	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0009	990	1	0	0	1	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0010	990	1	0	0	0	0	1	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0011	990	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0012	990	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0013	990	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0014	990	1	1	0	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	c0015	990	1	0	1	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDS_chr12_113387445_113408887	1/1	c0001	987	336	84	67	132	16	35	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	c0002	987	2	0	0	0	2	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	c0003	987	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	c0004	987	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	c0005	987	1	0	1	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	c0006	987	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887