JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SDS_chr12_113387445_113408887	0/0	c0007	987	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	c0008	987	1	0	0	0	0	1	copy fasta	SDS	chr12	113387445	113408887
SEBOX_chr17_28358506_28370199	0/1	c0001	573	259	73	53	93	10	29	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0002	573	83	14	10	50	2	7	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	1/0	c0003	573	35	1	19	1	4	9	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0004	573	2	2	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0005	573	2	2	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0006	573	1	0	0	1	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0007	573	1	1	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0008	573	1	1	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0009	573	1	0	0	1	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	c0010	573	1	0	0	0	0	1	copy fasta	SEBOX	chr17	28358506	28370199
SEC11A_chr15_84664544_84721139	1/1	c0001	540	320	92	66	114	12	34	copy fasta	SEC11A	chr15	84664544	84721139
SEC11C_chr18_59134884_59163832	1/1	c0001	579	422	77	75	218	8	42	copy fasta	SEC11C	chr18	59134884	59163832
SEC11C_chr18_59134884_59163832	0/0	c0002	579	22	21	1	0	0	0	copy fasta	SEC11C	chr18	59134884	59163832
SEC13_chr3_10295931_10326112	1/1	c0001	969	370	89	60	159	10	50	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	c0002	969	7	7	0	0	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	c0003	969	1	0	1	0	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	c0004	969	1	0	1	0	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	c0005	969	1	0	0	1	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC14L1_chr17_77135969_77222101	0/1	c0001	2148	249	50	52	122	6	18	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0002	2148	127	21	25	55	7	19	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0003	2148	30	1	0	21	1	7	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	1/0	c0004	2148	8	7	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0005	2148	6	6	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0006	2148	2	0	0	0	0	2	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0007	2148	2	2	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0008	2148	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0009	2148	1	0	0	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0010	2148	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0011	2148	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0012	2148	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	c0013	2148	1	0	0	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L2_chr22_30392018_30430303	1/1	c0001	1212	243	51	49	99	11	31	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	c0002	1212	159	36	31	72	7	13	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	c0003	1212	8	0	0	8	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	c0004	1212	7	7	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	c0005	1212	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	c0006	1212	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	c0007	1212	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L3_chr22_30454229_30477017	0/0	c0001	1203	181	38	21	93	3	26	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	1/0	c0002	1203	84	10	33	23	8	9	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/1	c0003	1203	78	19	9	43	0	6	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0004	1203	68	22	11	28	4	3	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0005	1203	27	0	5	19	2	1	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0006	1203	4	4	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0007	1203	2	0	0	0	0	2	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0008	1203	2	0	2	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0009	1203	2	1	1	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0010	1203	2	0	0	0	1	1	copy fasta	SEC14L3	chr22	30454229	30477017