JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC14L3_chr22_30454229_30477017	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0012	1203	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0013	1203	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	c0014	1203	1	1	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L4_chr22_30483902_30510695	1/1	c0001	1221	277	34	45	154	10	32	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0002	1221	43	3	23	5	6	6	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0003	1221	36	12	3	20	0	1	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0004	1221	15	3	3	0	1	8	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0005	1221	13	13	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0006	1221	13	12	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0007	1221	6	5	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0008	1221	6	6	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0009	1221	4	4	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0010	1221	2	0	0	2	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0011	1221	2	0	0	0	1	1	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0012	1221	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0013	1221	1	0	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0014	1221	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0015	1221	1	0	0	1	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0016	1221	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0017	1221	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	c0018	1221	1	0	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L5_chr16_4953330_5024157	1/0	c0001	2091	143	23	12	83	5	19	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/1	c0002	2091	129	41	29	39	8	11	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0003	2091	36	4	17	8	3	4	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0004	2091	14	13	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0005	2091	12	0	0	12	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0006	2091	8	0	8	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0007	2091	4	1	0	0	0	3	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0008	2091	4	4	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0009	2091	3	0	0	3	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0010	2091	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0011	2091	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0012	2091	1	0	0	0	1	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0013	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0014	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0015	2091	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0016	2091	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0017	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0018	2091	1	0	0	0	0	1	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0019	2091	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0020	2091	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0021	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0022	2091	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0023	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0024	2091	1	0	0	0	1	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0025	2091	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0026	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0027	2091	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0028	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157