JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC14L5_chr16_4953330_5024157	0/0	c0029	2091	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0030	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	c0031	2091	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L6_chr22_30517799_30551741	0/1	c0001	1194	175	30	32	81	4	27	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0002	1194	77	8	15	41	2	11	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0003	1194	43	16	3	23	0	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0004	1194	14	0	6	2	1	5	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0005	1194	14	1	7	1	5	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	1/0	c0006	1194	8	0	5	0	0	2	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0007	1194	7	5	1	1	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0008	1194	7	7	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0009	1194	6	0	6	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0010	1194	5	0	0	5	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0011	1194	5	4	1	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0012	1194	5	5	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0013	1194	4	4	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0014	1194	4	4	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0015	1194	3	0	0	3	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0016	1194	3	2	1	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0017	1194	3	0	1	0	2	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0018	1194	2	0	0	0	1	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0019	1194	2	0	0	2	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0020	1194	2	0	0	2	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0021	1194	2	0	0	0	0	2	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0022	1194	2	0	2	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0023	1194	1	0	0	0	0	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0024	1194	1	0	0	1	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	c0025	1194	1	0	0	0	1	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC16A_chr9_136435105_136488040	1/0	c0001	7074	121	46	15	47	3	9	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/1	c0002	7074	42	4	10	23	2	2	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0003	7074	27	4	10	8	3	2	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0004	7074	12	10	2	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0005	7074	12	0	1	1	3	7	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0006	7074	9	0	5	0	1	3	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0007	7074	9	0	7	0	1	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0008	7074	6	5	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0009	7074	6	0	4	0	1	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0010	7074	4	3	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0011	7074	3	3	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0012	7074	3	0	2	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0013	7074	2	1	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0014	7074	2	0	0	1	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0015	7074	2	0	1	0	1	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0016	7074	2	0	0	0	1	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0017	7074	2	0	0	2	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0018	7074	2	1	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0019	7074	2	2	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0020	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0021	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0022	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040