JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC16A_chr9_136435105_136488040	0/0	c0023	7074	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0024	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0025	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0026	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0027	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0028	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0029	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0030	7074	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0031	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0032	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0033	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0034	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0035	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0036	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0037	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0038	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0039	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0040	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0041	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0042	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0043	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0044	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0045	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0046	7074	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0047	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0048	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0049	7074	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0050	7074	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0051	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0052	7074	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0053	7074	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0054	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0055	7074	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0056	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	c0057	7074	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16B_chr1_177923788_177975058	0/0	c0001	3183	68	15	13	27	4	9	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0002	3183	44	1	9	29	0	5	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0003	3183	44	1	11	27	0	5	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0004	3183	28	1	4	20	0	3	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0005	3183	28	3	2	17	0	6	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0006	3183	26	4	12	1	3	6	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0007	3183	17	9	6	1	1	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0008	3183	17	14	1	2	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0009	3183	11	0	0	10	1	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0010	3183	10	0	0	10	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0011	3183	8	6	2	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	1/0	c0012	3183	7	1	0	5	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0013	3183	6	0	2	0	2	2	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0014	3183	5	1	3	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0015	3216	5	0	1	4	0	0	copy fasta	SEC16B	chr1	177923788	177975058