JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATOH8_chr2_85748991_85796383	0/0	c0013	966	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0014	966	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0015	966	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	c0016	966	1	0	0	0	0	1	copy fasta	ATOH8	chr2	85748991	85796383
ATOSA_chr15_52576321_52684388	0/1	c0001	3231	142	34	21	74	1	11	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0002	3231	84	13	25	29	3	14	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0003	3231	56	5	2	46	0	3	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0004	3231	26	11	6	0	2	7	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0005	3231	14	8	2	2	0	2	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0006	3231	8	8	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0007	3231	7	7	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0008	3231	6	6	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0009	3231	5	0	0	5	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0010	3231	2	2	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0011	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0012	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	1/0	c0013	3231	1	0	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0014	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0015	3231	1	0	0	0	0	1	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0016	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0017	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0018	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0019	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0020	3231	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0021	3231	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	c0022	3231	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSB_chr9_35099117_35120862	0/1	c0001	1617	210	49	27	105	9	19	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0002	1617	134	25	7	94	0	8	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0003	1617	48	0	29	0	6	13	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	1/0	c0004	1617	10	9	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0005	1617	6	2	3	0	1	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0006	1617	5	3	2	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0007	1617	3	0	0	3	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0008	1617	2	0	2	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0009	1617	2	0	1	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0010	1617	2	2	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0011	1617	1	0	0	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0012	1617	1	0	0	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0013	1617	1	0	0	1	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0015	1617	1	0	0	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0016	1617	1	0	0	1	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0017	1617	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0019	1629	1	0	1	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	c0020	1617	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOX1_chr5_151737822_151763631	1/1	c0001	207	378	98	74	156	16	32	copy fasta	ATOX1	chr5	151737822	151763631
ATP10A_chr15_25673712_25868327	0/1	c0001	4500	67	15	9	25	5	12	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0002	4500	53	8	18	22	1	4	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0003	4500	29	4	13	6	2	4	copy fasta	ATP10A	chr15	25673712	25868327