JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC16B_chr1_177923788_177975058	0/0	c0066	3183	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0067	3183	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0068	3183	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0069	3216	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0070	3216	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	c0071	3216	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC22A_chr3_123196943_123279136	1/1	c0001	924	336	76	54	142	16	46	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	c0002	924	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	c0003	924	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	c0004	924	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	c0005	924	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22B_chr1_120145898_120181520	1/1	c0001	648	201	19	39	114	7	20	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	c0002	648	178	75	19	55	7	22	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	c0003	648	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22C_chr3_42542969_42586967	1/1	c0001	912	194	20	49	83	12	28	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	c0002	912	109	34	12	50	3	10	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	c0003	912	82	34	9	30	1	8	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	c0004	912	6	6	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	c0005	912	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	c0006	912	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	c0007	912	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC23A_chr14_39026919_39108235	0/0	c0001	2298	170	68	29	46	7	20	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	1/1	c0002	2298	97	15	17	53	5	5	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	c0003	2298	92	7	19	55	4	7	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	c0004	2298	3	3	0	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	c0005	2298	2	0	2	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	c0006	2298	1	1	0	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	c0007	2298	1	0	1	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23B_chr20_18502940_18566415	1/1	c0001	2304	312	64	50	153	12	31	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0002	2304	37	5	10	22	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0003	2304	18	2	9	0	2	5	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0004	2304	14	14	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0005	2304	5	0	2	3	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0006	2304	4	0	0	0	1	3	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0007	2304	4	2	2	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0008	2304	3	0	0	0	0	3	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0009	2304	2	2	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0010	2304	2	2	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0011	2304	2	0	0	2	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0012	2304	1	0	1	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0013	2304	1	0	0	1	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0014	2304	1	0	0	0	1	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0015	2304	1	0	1	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0016	2304	1	0	1	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0017	2304	1	1	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	c0018	2304	1	0	0	1	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23IP_chr10_119887730_119949657	0/1	c0001	3003	228	54	51	97	7	18	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	1/0	c0002	3003	83	12	22	34	5	9	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0003	3003	49	0	2	35	2	10	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0004	3003	7	7	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657