JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC23IP_chr10_119887730_119949657	0/0	c0005	3003	5	5	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0006	3003	5	4	0	0	0	1	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0007	3003	4	4	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0008	3003	3	0	0	3	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0009	3003	3	0	0	3	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0010	3003	3	2	1	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0011	3003	2	0	0	0	2	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0012	3003	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0013	3003	1	1	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0014	3003	1	0	0	0	0	1	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0015	3003	1	1	0	0	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0016	3003	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0017	3003	1	0	0	0	0	1	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0018	3003	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC23IP_chr10_119887730_119949657	0/0	c0019	3003	1	0	0	1	0	0	copy fasta	SEC23IP	chr10	119887730	119949657
SEC24A_chr5_134643785_134732909	1/1	c0001	3282	294	71	44	132	14	31	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0002	3282	6	0	0	6	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0003	3282	4	4	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0004	3282	2	0	0	2	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0005	3282	2	1	1	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0006	3282	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0007	3282	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0008	3282	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0009	3282	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0010	3282	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0011	3282	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0012	3282	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0013	3282	1	0	0	0	0	1	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0014	3282	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	c0015	3282	1	0	1	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24B_chr4_109428815_109545896	1/1	c0001	3807	177	66	36	57	3	13	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0002	3807	18	6	6	0	1	5	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0003	3807	9	0	0	5	0	4	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0004	3807	3	0	0	2	0	1	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0005	3807	2	0	0	2	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0006	3807	2	2	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0007	3807	2	1	1	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0008	3807	2	1	1	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0009	3807	1	0	0	0	0	1	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0010	3807	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0011	3807	1	0	0	1	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0012	3807	1	0	0	1	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0013	3807	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0014	3807	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	c0015	3807	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24C_chr10_73739372_73777161	1/1	c0001	3285	230	52	30	106	11	29	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0002	3285	61	14	8	29	1	9	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0003	3285	9	0	0	9	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0004	3285	6	0	0	6	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0005	3285	2	0	0	2	0	0	copy fasta	SEC24C	chr10	73739372	73777161