JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC24C_chr10_73739372_73777161	0/0	c0006	3285	2	0	2	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0007	3285	2	2	0	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0008	3285	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0009	3285	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0010	3285	1	0	0	0	0	1	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0011	3285	1	0	1	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0012	3285	1	1	0	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0013	3285	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0014	3285	1	0	1	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0015	3285	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0016	3285	1	0	0	0	0	1	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	c0017	3285	1	1	0	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24D_chr4_118717823_118841126	1/0	c0001	3099	134	34	23	53	7	16	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/1	c0002	3099	104	5	28	54	4	12	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0003	3099	16	0	1	15	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0004	3099	10	0	0	10	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0005	3099	7	5	2	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0006	3099	4	4	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0007	3099	3	2	0	0	1	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0008	3099	3	2	1	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0009	3099	2	1	1	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0010	3099	2	1	1	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0011	3099	2	2	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0012	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0013	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0014	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0015	3099	1	0	0	1	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0016	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0017	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0018	3099	1	0	1	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0019	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0020	3099	1	0	0	1	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0021	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0022	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0023	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	c0024	3099	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC31A_chr4_82813509_82896153	0/0	c0001	3663	193	41	24	102	5	21	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/1	c0002	3663	94	12	18	51	3	9	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0003	3663	11	11	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0004	3663	6	6	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0005	3663	5	3	1	0	0	1	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0006	3663	4	4	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0007	3663	2	0	0	0	0	2	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0008	3663	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0009	3663	1	0	0	1	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0010	3663	1	0	0	0	0	1	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0011	3663	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0012	3663	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0013	3663	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0014	3663	1	1	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153