JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC31A_chr4_82813509_82896153	1/0	c0015	3663	1	0	0	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0016	3663	1	0	1	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0017	3663	1	0	0	1	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0018	3663	1	0	1	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0019	3663	1	0	0	1	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31A_chr4_82813509_82896153	0/0	c0020	3663	1	0	1	0	0	0	copy fasta	SEC31A	chr4	82813509	82896153
SEC31B_chr10_100481647_100524861	1/0	c0001	3540	181	49	34	73	9	15	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/1	c0002	3540	50	4	8	29	4	4	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0003	3540	10	0	0	10	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0004	3540	8	8	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0005	3540	6	0	5	0	0	1	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0006	3540	6	1	2	3	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0007	3540	4	4	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0008	3540	3	3	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0009	3540	3	3	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0010	3540	3	0	1	0	0	2	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0011	3540	3	3	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0012	3540	3	0	1	1	1	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0013	3540	2	2	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0014	3540	2	0	2	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0015	3540	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0016	3540	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0017	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0018	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0019	3540	1	0	1	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0020	3540	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0021	3540	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0022	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0023	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0024	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0025	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0026	3540	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0027	3540	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	c0028	3540	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC61A1_chr3_128047437_128076683	1/1	c0001	1431	374	84	72	163	13	40	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0002	1431	2	2	0	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0003	1431	1	0	0	1	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0004	1431	1	0	0	0	0	1	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0005	1431	1	0	1	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0006	1431	1	0	0	0	1	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0007	1431	1	0	1	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	c0008	1431	1	0	0	0	0	1	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A2_chr10_12124677_12170407	1/1	c0001	1431	176	38	30	81	3	22	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	c0002	1431	175	34	38	80	9	14	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	c0003	1431	6	6	0	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	c0004	1431	1	1	0	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	c0005	1431	1	1	0	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	c0006	1431	1	0	0	1	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61B_chr9_99217282_99235615	1/1	c0001	291	348	87	69	132	18	40	copy fasta	SEC61B	chr9	99217282	99235615
SEC61B_chr9_99217282_99235615	0/0	c0002	291	1	0	1	0	0	0	copy fasta	SEC61B	chr9	99217282	99235615