JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEC61B_chr9_99217282_99235615	0/0	c0003	291	1	1	0	0	0	0	copy fasta	SEC61B	chr9	99217282	99235615
SEC61G_chr7_54747253_54764211	1/1	c0001	207	404	88	70	180	18	46	copy fasta	SEC61G	chr7	54747253	54764211
SEC61G_chr7_54747253_54764211	0/0	c0002	207	2	0	0	2	0	0	copy fasta	SEC61G	chr7	54747253	54764211
SEC62_chr3_169961807_170003373	1/1	c0001	1200	309	74	45	142	6	40	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	c0002	1200	12	11	1	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	c0003	1200	7	7	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	c0004	1200	6	0	0	6	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	c0005	1200	2	0	2	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC63_chr6_107862756_107963208	0/0	c0001	2283	214	74	46	70	6	18	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	1/1	c0002	2283	105	14	10	72	3	4	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0003	2283	3	3	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0004	2283	2	0	0	0	0	2	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0005	2283	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0006	2283	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0007	2283	1	0	0	0	1	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0008	2283	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0009	2283	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0010	2283	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0011	2283	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	c0012	2283	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SECISBP2L_chr15_48983638_49051446	1/0	c0001	3306	221	67	32	99	7	15	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0002	3306	67	3	12	28	5	19	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/1	c0003	3306	63	13	7	28	4	10	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0004	3306	11	5	4	0	2	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0005	3306	2	0	0	2	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0006	3306	2	0	2	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0007	3306	2	2	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0008	3306	2	0	0	0	0	2	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0009	3306	2	0	0	0	0	2	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0010	3306	1	0	0	1	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0011	3306	1	1	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0012	3306	1	1	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0013	3306	1	0	0	0	0	1	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0014	3306	1	0	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	c0015	3306	1	0	0	0	0	1	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2_chr9_89313500_89364663	1/1	c0001	2565	367	84	70	161	12	38	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0002	2565	2	0	0	2	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0003	2565	2	2	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0004	2565	2	0	2	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0005	2565	2	2	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0006	2565	1	0	0	0	0	1	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0007	2565	1	1	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0008	2565	1	0	0	1	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0009	2565	1	0	0	0	0	1	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	c0010	2565	1	1	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECTM1_chr17_82316024_82338766	1/1	c0001	747	230	71	43	83	5	26	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0002	747	108	5	23	58	13	9	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0003	747	18	9	8	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0004	747	6	6	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0005	747	2	2	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766