JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SECTM1_chr17_82316024_82338766	0/0	c0006	747	2	0	0	0	0	2	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0007	747	2	0	2	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0008	747	1	0	0	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0009	747	1	1	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0010	747	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0011	747	1	0	0	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0012	747	1	0	1	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	c0013	747	1	0	1	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SEH1L_chr18_12943011_12992531	0/0	c0001	1266	293	86	39	128	10	30	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	1/1	c0002	1266	73	4	22	25	6	14	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0003	1266	8	0	0	7	0	1	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0004	1266	6	2	0	4	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0005	1266	2	0	1	0	0	1	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0006	1266	2	0	2	0	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0007	1266	2	0	0	2	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	c0009	1266	1	0	0	1	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEL1L2_chr20_13844247_13995614	0/1	c0001	2067	248	65	34	120	7	21	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0002	2067	33	0	7	18	1	7	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0003	2067	9	0	5	0	1	3	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	1/0	c0004	2067	7	2	1	0	2	1	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0005	2067	5	0	3	0	1	1	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0006	2067	4	0	0	4	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0007	2067	3	3	0	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0008	2067	2	0	0	0	2	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0009	2067	2	0	2	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0010	2067	2	1	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0011	2067	2	2	0	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0012	2067	2	0	0	0	2	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0013	2067	1	0	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0014	2067	1	1	0	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0015	2067	1	0	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0016	2067	1	0	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	c0017	2067	1	0	0	0	0	1	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L3_chr4_25742433_25867988	1/1	c0001	3399	230	37	49	99	9	34	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0002	3399	9	9	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0003	3399	8	3	1	2	0	2	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0004	3399	7	0	0	7	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0005	3399	6	4	2	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0006	3399	5	5	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0007	3399	5	5	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0008	3399	4	4	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0009	3399	4	4	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0010	3399	3	2	1	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0011	3399	3	3	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0012	3399	2	0	0	0	0	2	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0013	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0014	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0015	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0016	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988