JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEL1L3_chr4_25742433_25867988	0/0	c0017	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0018	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0019	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0020	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0021	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0022	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0023	3399	1	0	0	0	1	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0024	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0025	3399	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0026	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0027	3399	1	0	1	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0028	3399	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0029	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0030	3399	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0031	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0032	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0033	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0034	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0035	3399	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0036	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0037	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	c0038	3399	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L_chr14_81466547_81538853	1/1	c0001	2385	311	49	57	154	12	37	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0002	2385	26	23	3	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0003	2385	9	9	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0004	2385	3	2	1	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0005	2385	3	1	1	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0006	2385	2	2	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0007	2385	2	0	1	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0008	2385	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0009	2385	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0010	2385	1	0	1	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	c0011	2385	1	0	0	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SELENBP1_chr1_151359304_151377705	1/1	c0001	1419	414	88	80	192	11	41	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0002	1419	6	6	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0003	1419	3	0	2	0	1	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0004	1419	3	0	0	0	0	3	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0005	1419	3	0	1	2	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0006	1419	1	0	1	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0007	1419	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0008	1419	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0009	1419	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0010	1419	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0011	1419	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0012	1419	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0013	1419	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	c0014	1419	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENOF_chr1_86857445_86919126	1/1	c0001	498	224	92	32	56	8	34	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	c0002	498	1	1	0	0	0	0	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	c0003	498	1	1	0	0	0	0	copy fasta	SELENOF	chr1	86857445	86919126