JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SELENOH_chr11_57736491_57748550	1/1	c0001	369	356	87	72	148	14	33	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	c0002	369	8	0	0	8	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	c0003	369	3	3	0	0	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	c0004	369	1	0	0	0	0	1	copy fasta	SELENOH	chr11	57736491	57748550
SELENOI_chr2_26341143_26400885	0/0	c0001	1194	211	62	53	77	7	12	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/1	c0002	1194	77	8	19	36	5	8	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	1/0	c0003	1194	32	11	4	16	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	c0004	1194	6	1	0	5	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	c0005	1194	6	6	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	c0006	1194	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	c0007	1194	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOK_chr3_53879417_53896859	1/1	c0001	285	416	91	69	202	12	40	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	c0002	285	6	3	3	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOM_chr22_31099777_31112568	1/1	c0001	438	376	88	78	147	13	48	copy fasta	SELENOM	chr22	31099777	31112568
SELENOM_chr22_31099777_31112568	0/0	c0002	438	1	0	0	1	0	0	copy fasta	SELENOM	chr22	31099777	31112568
SELENOM_chr22_31099777_31112568	0/0	c0003	438	1	0	0	0	1	0	copy fasta	SELENOM	chr22	31099777	31112568
SELENON_chr1_25795193_25823221	0/1	c0001	1773	258	17	54	151	7	28	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0002	1773	31	25	4	0	0	2	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	1/0	c0003	1773	28	9	4	7	3	4	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0004	1773	18	15	3	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0005	1773	13	8	0	4	0	1	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0006	1773	7	0	2	0	4	1	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0007	1773	6	6	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0008	1773	6	5	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0009	1773	4	4	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0010	1773	3	0	0	3	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0011	1773	3	3	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0012	1773	2	1	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0013	1785	1	0	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0014	1773	1	0	0	1	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0015	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0016	1773	1	0	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0017	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0018	1773	1	0	0	0	0	1	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0019	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0020	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0021	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0022	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0023	1773	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0024	1773	1	0	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	c0025	1773	1	0	0	0	0	1	copy fasta	SELENON	chr1	25795193	25823221
SELENOO_chr22_50196011_50222616	0/1	c0001	2010	195	39	30	95	6	24	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	1/0	c0002	2010	167	16	35	90	9	16	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0003	2010	15	12	3	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0004	2010	13	0	0	10	0	3	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0005	2010	11	11	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0006	2010	3	2	1	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0007	2010	3	2	1	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0008	2010	3	0	1	0	1	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0009	2010	3	3	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616