JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SELENOO_chr22_50196011_50222616	0/0	c0010	2010	2	0	0	2	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0011	2010	2	2	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0012	2010	2	0	0	2	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0013	2010	2	0	1	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0014	2010	1	0	0	1	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0015	2010	1	0	0	1	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0016	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0018	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0019	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0020	2010	1	0	0	0	1	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0021	2010	1	0	1	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0022	2010	1	0	1	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0023	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0024	2010	1	0	0	1	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0025	2010	1	0	0	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0026	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0027	2010	1	0	0	0	1	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0028	2010	1	0	0	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0029	2010	1	1	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	c0030	2010	1	0	0	0	0	1	copy fasta	SELENOO	chr22	50196011	50222616
SELENOP_chr5_42794880_42816892	1/0	c0001	1146	326	53	56	174	12	30	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/1	c0002	1146	56	28	14	0	4	9	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	c0003	1146	8	8	0	0	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	c0004	1146	2	0	0	2	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	c0005	1146	2	2	0	0	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	c0006	1146	1	0	0	0	0	1	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	c0007	1146	1	1	0	0	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOS_chr15_101267191_101282485	1/1	c0001	570	432	90	76	203	18	43	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0002	570	10	8	2	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0003	570	1	1	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0004	570	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0005	570	1	0	0	0	0	1	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0006	570	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0007	570	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	c0008	570	1	1	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOT_chr3_150598321_150635436	1/1	c0001	588	376	90	76	156	12	40	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	c0002	588	4	4	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOV_chr19_39510139_39525675	1/1	c0001	1041	258	55	54	111	9	27	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0002	1041	134	30	21	64	6	13	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0003	1041	25	5	0	19	1	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0004	1041	11	0	2	9	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0005	1041	1	1	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0008	1041	1	0	0	0	0	1	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0010	1041	1	0	0	0	0	1	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	c0012	1041	1	0	1	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675