JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP10A_chr15_25673712_25868327	0/0	c0004	4500	18	0	0	11	0	7	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0005	4500	14	0	1	13	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0006	4500	7	7	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0007	4500	7	4	1	0	0	2	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0008	4500	4	2	0	0	2	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	1/0	c0009	4500	4	3	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0010	4500	3	0	0	0	0	3	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0011	4500	3	0	0	2	1	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0012	4500	3	0	2	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0013	4500	3	0	1	2	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0014	4500	3	0	1	2	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0015	4500	3	2	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0016	4500	3	3	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0017	4500	3	0	3	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0018	4500	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0019	4500	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0020	4500	2	0	0	2	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0021	4500	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0022	4500	2	0	2	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0023	4500	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0024	4500	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0025	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0026	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0027	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0028	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0029	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0030	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0031	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0032	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0033	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0034	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0035	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0036	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0037	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0038	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0039	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0040	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0041	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0042	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0043	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0044	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0045	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0046	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0047	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0048	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0049	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0050	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0051	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0052	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0053	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327