JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SELENOW_chr19_47773703_47789682	1/1	c0001	264	379	96	72	147	16	46	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	c0002	264	24	0	0	24	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	c0003	264	2	2	0	0	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	c0004	264	1	0	0	1	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELE_chr1_169717640_169739079	1/1	c0001	1833	299	60	50	145	13	29	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0002	1833	61	5	9	41	1	5	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0003	1833	23	3	3	12	0	5	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0004	1833	19	2	7	5	2	3	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0005	1833	7	7	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0006	1833	5	5	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0007	1833	4	0	0	0	0	4	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0008	1833	4	4	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0009	1833	3	3	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0010	1833	2	1	1	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0011	1833	2	0	0	2	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0012	1833	2	0	0	2	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0013	1833	1	1	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0014	1833	1	1	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0015	1833	1	0	0	1	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0016	1833	1	0	0	0	0	1	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0017	1833	1	0	0	1	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0018	1833	1	0	0	0	0	1	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	c0019	1833	1	0	0	1	0	0	copy fasta	SELE	chr1	169717640	169739079
SELL_chr1_169685667_169716620	1/1	c0001	1119	258	40	35	141	11	29	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0002	1119	90	14	16	50	1	9	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0003	1119	32	10	14	0	2	6	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0004	1119	19	2	7	4	2	4	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0005	1119	11	11	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0006	1119	6	6	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0007	1119	5	5	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0008	1119	3	3	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0009	1119	2	2	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0010	1119	2	2	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0011	1119	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0012	1119	1	0	0	1	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0013	1119	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	c0014	1119	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELPLG_chr12_108616895_108638894	1/0	c0001	1239	222	36	51	88	15	31	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0002	1209	113	10	14	80	1	8	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/1	c0003	1239	85	16	15	50	1	2	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0004	1179	30	20	4	0	0	6	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0005	1209	9	0	0	9	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0006	1209	6	5	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0007	1239	3	3	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0008	1239	2	0	0	2	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0009	1239	2	2	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0010	1179	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0012	1239	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0013	1209	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894