JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SELPLG_chr12_108616895_108638894	0/0	c0014	1239	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0015	1239	1	0	0	0	0	1	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0016	1239	1	0	0	0	1	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0017	1239	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0018	1209	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0019	1239	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0020	1209	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0021	1209	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0022	1209	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	c0023	1239	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELP_chr1_169583849_169635124	0/0	c0001	2493	69	4	16	37	2	10	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/1	c0002	2493	61	4	7	43	0	6	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	1/0	c0003	2493	38	5	14	4	4	10	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0004	2493	22	17	4	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0005	2493	18	3	0	12	0	3	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0006	2493	18	12	4	0	2	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0007	2493	15	1	0	14	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0008	2493	9	1	6	0	1	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0009	2493	7	1	5	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0010	2493	5	5	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0011	2493	5	0	3	0	0	2	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0012	2493	5	0	0	5	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0013	2493	4	4	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0014	2493	3	3	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0015	2493	3	1	2	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0016	2493	3	3	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0017	2493	3	2	1	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0018	2493	3	3	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0019	2493	2	2	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0020	2493	2	0	1	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0021	2493	2	2	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0022	2493	2	2	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0023	2493	2	2	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0024	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0025	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0026	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0027	2493	1	0	1	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0028	2493	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0029	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0030	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0031	2493	1	0	1	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0032	2493	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0033	2493	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0034	2493	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0035	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0036	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0037	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0038	2493	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0039	2493	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0040	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124