JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SELP_chr1_169583849_169635124	0/0	c0041	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0042	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0043	2493	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0044	2493	1	0	1	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0045	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0046	2493	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0047	2493	1	0	0	0	1	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	c0048	2493	1	0	0	1	0	0	copy fasta	SELP	chr1	169583849	169635124
SEM1_chr7_96683762_96714846	0/0	c0001	213	339	83	75	125	17	39	copy fasta	SEM1	chr7	96683762	96714846
SEM1_chr7_96683762_96714846	0/0	c0002	213	15	7	1	5	1	1	copy fasta	SEM1	chr7	96683762	96714846
SEMA3A_chr7_83950777_84199789	0/1	c0001	2316	132	25	27	63	3	13	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0002	2316	35	0	2	30	0	3	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	1/0	c0003	2316	35	26	5	2	1	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0004	2316	30	10	5	9	2	4	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0005	2316	25	5	4	9	0	7	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0006	2316	5	0	0	5	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0007	2316	3	2	1	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0008	2316	2	2	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0009	2316	2	0	2	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0010	2316	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0011	2316	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0012	2316	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0013	2316	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0014	2316	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0015	2316	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	c0016	2316	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3B_chr3_50264147_50282546	1/1	c0001	2250	247	56	53	87	16	33	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0002	2250	102	3	14	84	0	1	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0003	2250	16	14	2	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0004	2250	8	7	1	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0005	2250	3	3	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0006	2250	2	2	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0007	2250	2	0	2	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0008	2250	2	2	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0009	2250	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0010	2250	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0011	2250	1	0	0	0	0	1	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0012	2250	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0013	2250	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0014	2250	1	0	0	0	0	1	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0015	2250	1	0	0	1	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	c0016	2250	1	1	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3C_chr7_80737538_80924051	0/1	c0001	2256	76	16	15	37	2	5	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0002	2256	66	21	3	31	1	10	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0003	2256	18	0	1	17	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0004	2256	13	1	5	2	2	3	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0005	2256	10	0	1	8	0	1	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0006	2256	10	4	0	5	0	1	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0007	2256	8	8	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	1/0	c0008	2256	5	4	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051