JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA3C_chr7_80737538_80924051	0/0	c0009	2256	5	5	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0010	2256	4	0	3	1	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0011	2256	4	4	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0012	2256	4	0	2	0	1	1	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0013	2256	3	0	1	2	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0014	2256	2	0	0	2	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0015	2256	2	2	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0016	2256	2	0	0	2	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0017	2256	2	2	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0018	2256	1	0	0	0	0	1	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0019	2256	1	0	0	1	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0020	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0021	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0022	2256	1	0	1	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0023	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0024	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0025	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0026	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	c0027	2256	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3D_chr7_84990553_85192056	1/1	c0001	2334	168	46	28	68	6	18	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0002	2334	46	19	3	24	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0003	2334	30	2	13	5	4	6	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0004	2334	4	4	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0005	2334	4	4	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0006	2334	3	2	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0007	2334	2	1	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0008	2334	2	0	0	0	0	2	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0009	2334	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0010	2334	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0011	2334	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0012	2334	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0013	2334	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0014	2334	1	0	0	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	c0015	2334	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3E_chr7_83358238_83654139	1/1	c0001	2328	53	27	10	1	2	11	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0002	2328	49	7	12	22	2	6	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0003	2328	45	6	14	21	0	4	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0004	2328	32	4	4	18	0	6	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0005	2328	22	21	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0006	2328	7	7	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0007	2328	4	4	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0008	2328	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0009	2328	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0010	2328	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0011	2328	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0012	2328	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0013	2328	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0014	2328	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	c0015	2328	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3F_chr3_50150324_50194075	0/0	c0001	2358	112	27	24	42	4	15	copy fasta	SEMA3F	chr3	50150324	50194075