JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA3F_chr3_50150324_50194075	0/1	c0002	2358	98	29	14	37	8	9	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0003	2358	68	0	11	56	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	1/0	c0004	2358	45	21	16	0	2	5	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0005	2358	9	7	2	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0006	2358	2	2	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0007	2358	2	0	0	2	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0008	2358	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0009	2358	1	0	1	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0010	2358	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0011	2358	1	0	0	0	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0012	2358	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0013	2358	1	0	0	0	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0014	2358	1	0	0	1	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	c0015	2358	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3G_chr3_52428035_52450103	1/1	c0001	2349	279	68	75	94	10	30	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0002	2349	15	15	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0003	2349	4	0	0	3	0	1	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0004	2349	4	0	1	0	2	1	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0005	2349	2	2	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0006	2349	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0007	2349	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0008	2349	1	0	1	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0009	2349	1	1	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0010	2349	1	0	1	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	c0011	2349	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA4A_chr1_156148585_156182744	1/1	c0001	2286	196	54	34	75	6	25	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0002	2286	143	31	37	49	11	15	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0003	2286	13	0	0	13	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0004	2286	5	1	4	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0005	2286	3	0	0	3	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0006	2286	3	3	0	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0007	2286	1	1	0	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0008	2286	1	0	1	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0009	2286	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0010	2286	1	0	0	0	1	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0011	2286	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0012	2286	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0013	2286	1	0	0	0	0	1	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0014	2286	1	0	1	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0015	2286	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0016	2286	1	0	0	0	0	1	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	c0017	2286	1	0	1	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4B_chr15_90196330_90234660	1/1	c0001	2514	55	3	4	37	5	4	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0002	2514	51	0	9	39	0	3	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0003	2514	50	4	13	25	2	6	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0004	2514	45	1	9	25	2	8	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0005	2514	41	4	11	13	3	10	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0006	2514	34	21	9	0	1	3	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0007	2514	29	15	3	10	0	1	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	c0008	2514	18	9	0	8	0	1	copy fasta	SEMA4B	chr15	90196330	90234660