JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA4D_chr9_89372235_89503113	1/1	c0001	2589	174	52	42	54	7	17	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0002	2589	84	4	16	49	4	11	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0003	2589	41	15	6	13	1	6	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0004	2589	35	4	1	26	0	4	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0005	2589	8	0	5	0	1	2	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0006	2589	5	5	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0007	2589	4	2	2	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0008	2589	3	0	1	0	1	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0009	2589	3	0	2	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0010	2589	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0011	2589	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0012	2589	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0013	2589	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0014	2589	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0015	2589	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0016	2589	1	0	1	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0017	2589	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	c0018	2589	1	0	0	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4F_chr2_74649247_74688841	1/1	c0001	2313	248	85	44	99	3	15	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0002	2313	26	1	1	20	0	4	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0003	2313	3	0	0	3	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0004	2313	2	0	1	0	1	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0005	2313	2	0	2	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0006	2313	2	2	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0007	2313	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0008	2313	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0009	2313	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0010	2313	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0011	2313	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0012	2313	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0013	2313	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0014	2313	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0015	2313	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0016	2313	1	0	0	0	0	1	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0017	2313	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0018	2313	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	c0019	2313	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4G_chr10_100964504_100990616	1/1	c0001	2532	320	69	62	137	13	37	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0002	2532	9	8	0	0	0	1	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0003	2532	8	0	3	0	1	4	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0004	2532	5	4	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0005	2532	4	0	4	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0006	2532	3	0	0	3	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0007	2532	2	0	0	0	2	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0008	2532	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0009	2532	2	2	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0010	2532	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0011	2532	2	2	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0012	2532	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0013	2532	2	0	0	2	0	0	copy fasta	SEMA4G	chr10	100964504	100990616