JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA4G_chr10_100964504_100990616	0/0	c0014	2532	1	0	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0015	2532	1	0	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0016	2532	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0017	2532	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0018	2532	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0019	2532	1	0	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0020	2532	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0021	2532	1	0	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	c0022	2532	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA5A_chr5_9030033_9551075	1/0	c0001	3225	46	28	11	2	2	2	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0002	3225	15	1	4	5	3	2	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0003	3225	14	6	0	5	0	3	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0004	3225	12	4	1	5	1	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0005	3225	11	4	0	5	1	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/1	c0006	3225	8	2	2	0	0	3	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0007	3225	7	6	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0008	3225	3	1	0	1	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0009	3225	2	1	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0010	3225	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0011	3225	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0012	3225	1	0	0	0	1	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0013	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0014	3225	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0015	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0016	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0017	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0018	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0019	3225	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0020	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0021	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0022	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	c0023	3225	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5B_chr3_122904082_123032763	0/1	c0001	3456	100	16	33	28	8	14	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	1/0	c0002	3456	93	19	12	46	0	15	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0003	3456	21	3	4	5	2	7	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0004	3456	10	10	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0005	3456	8	7	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0006	3456	6	1	3	0	2	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0007	3456	5	5	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0008	3456	4	0	4	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0009	3456	4	3	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0010	3456	3	3	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0011	3456	3	3	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0012	3456	2	0	0	2	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0013	3456	2	0	2	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0014	3456	2	0	0	2	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0015	3456	2	1	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0016	3456	2	0	1	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0017	3456	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0018	3456	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763