JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA5B_chr3_122904082_123032763	0/0	c0019	3456	1	0	0	1	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0020	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0021	3456	1	0	0	0	1	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0022	3456	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0023	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0024	3456	1	0	0	1	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0025	3456	1	0	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0026	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0027	3456	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0028	3456	1	0	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0029	3456	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0030	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0031	3456	1	0	0	1	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0032	3456	1	0	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0033	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0034	3456	1	0	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0035	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0036	3456	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	c0037	3456	1	0	0	0	1	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA6A_chr5_116438555_116579823	1/1	c0001	3093	258	61	58	97	12	28	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0002	3093	12	0	5	6	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0003	3093	12	12	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0004	3093	7	7	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0005	3093	2	0	1	0	1	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0006	3093	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0007	3093	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0008	3093	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0009	3093	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0010	3093	1	0	0	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0011	3093	1	0	0	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0012	3093	1	0	0	0	1	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0013	3093	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0014	3093	1	0	0	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0015	3093	1	0	0	0	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0016	3093	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	c0017	3093	1	1	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6B_chr19_4537593_4564684	1/1	c0001	2667	193	37	41	80	10	23	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0002	2667	192	32	43	89	6	22	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0003	2667	8	8	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0004	2668	5	0	0	5	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0005	2667	5	4	1	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0006	2668	4	2	0	1	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0007	2668	3	0	0	2	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0008	2667	3	0	0	3	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0009	2667	3	3	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0010	2668	3	0	0	2	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0011	2667	2	2	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0012	2667	2	2	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0013	2673	2	2	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0014	2667	2	2	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684