JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA6B_chr19_4537593_4564684	0/0	c0015	2667	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0016	2667	1	0	1	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0017	2667	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0018	2667	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0019	2667	1	0	0	0	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0020	2667	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0021	2667	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0022	2667	1	0	0	0	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0023	2667	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0024	2667	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0025	2667	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0026	2673	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	c0027	2667	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6C_chr1_151126707_151151631	0/1	c0001	2793	213	41	41	99	4	27	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	1/0	c0002	2793	63	20	12	19	7	4	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0003	2793	20	13	1	2	1	3	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0004	2793	10	0	6	0	3	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0005	2793	7	7	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0006	2793	4	3	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0007	2793	3	0	0	0	1	2	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0008	2793	3	3	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0009	2793	2	2	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0010	2793	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0011	2793	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0012	2793	1	1	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0013	2793	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0014	2793	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0015	2793	1	0	1	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0016	2793	1	0	0	0	0	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0017	2793	1	0	1	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0018	2793	1	0	0	0	0	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0019	2793	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0020	2793	1	1	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0021	2793	1	1	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	c0022	2793	1	0	0	0	0	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6D_chr15_47712505_47779228	0/0	c0001	3222	122	40	14	64	0	4	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	1/1	c0002	3222	68	2	19	31	5	9	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0003	3222	61	3	16	31	5	6	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0004	3222	57	10	15	20	3	9	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0005	3222	42	25	0	11	0	6	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0006	3222	8	0	0	5	0	3	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0007	3222	7	4	2	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0008	3222	7	0	6	0	1	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0009	3222	3	2	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0010	3222	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0011	3222	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0012	3222	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0013	3222	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0014	3222	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0015	3222	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228