JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP10A_chr15_25673712_25868327	0/0	c0054	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0055	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0056	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0057	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0058	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0059	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0060	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0061	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0062	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0063	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0064	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0065	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0066	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0067	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0068	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0069	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0070	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0071	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0072	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0073	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0074	4500	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0075	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0076	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0077	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0078	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0079	4500	1	0	0	0	1	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0080	4500	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0081	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0082	4500	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	c0083	4500	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10B_chr5_160558120_160857211	0/0	c0001	4386	101	19	20	38	3	21	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/1	c0002	4386	34	12	5	12	2	2	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0003	4386	21	2	11	3	0	5	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	1/0	c0004	4386	15	2	2	6	1	3	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0005	4386	6	2	1	0	1	2	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0006	4386	5	3	2	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0007	4386	5	5	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0008	4386	4	3	1	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0009	4386	4	0	0	4	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0010	4386	4	0	2	0	2	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0011	4386	3	3	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0012	4386	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0013	4386	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0014	4386	2	1	0	0	1	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0015	4386	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0016	4386	2	1	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0017	4386	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0018	4386	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0019	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0020	4386	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211