JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMA6D_chr15_47712505_47779228	0/0	c0016	3222	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0017	3222	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0018	3222	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	c0019	3222	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA7A_chr15_74404289_74438958	1/0	c0001	2001	190	32	41	88	9	19	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0002	2001	72	13	18	27	1	13	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0003	2001	42	5	7	26	2	2	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0004	2001	37	8	1	26	0	2	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0005	2001	21	10	1	4	1	5	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0006	2001	9	7	0	2	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0007	2001	7	7	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/1	c0008	2001	6	0	2	1	2	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0009	2001	3	3	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0010	2001	2	0	2	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0011	2001	2	0	0	2	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0012	2001	2	0	0	2	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0013	2001	1	0	0	0	1	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0014	2001	1	1	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0015	2001	1	1	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0016	2001	1	1	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0017	2001	1	0	0	0	0	1	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0018	2001	1	0	1	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0019	2001	1	0	1	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0020	2001	1	0	0	0	0	1	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0021	2001	1	0	0	1	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0022	2001	1	0	0	0	0	1	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	c0023	2001	1	0	0	1	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMG1_chr20_45202033_45214768	1/1	c0001	1389	265	25	45	152	10	31	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0002	1389	59	38	10	7	2	2	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0003	1389	34	11	16	6	0	1	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0004	1209	10	1	4	1	2	2	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0005	1389	9	0	0	9	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0006	1389	6	0	4	2	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0007	1389	5	5	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0008	1389	2	1	1	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0009	1389	2	2	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0010	1389	2	0	0	0	0	2	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0011	1389	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0012	1389	1	0	1	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0013	1389	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0014	1389	1	0	1	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0015	1389	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0016	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0017	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0018	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0019	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0020	1389	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0021	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0022	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	c0023	1389	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768