JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEMG1_chr20_45202033_45214768	0/0	c0024	1389	1	1	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG2_chr20_45216373_45229458	1/1	c0001	1749	265	57	52	114	11	29	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0002	1749	46	13	15	16	0	2	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0003	1749	29	8	8	7	2	4	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0004	1749	11	11	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0005	1749	4	4	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0006	1749	1	1	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0007	1749	1	0	0	0	0	1	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0008	1749	1	0	0	0	1	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0009	1749	1	1	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0010	1749	1	0	0	1	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0011	1749	1	0	1	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SEMG2_chr20_45216373_45229458	0/0	c0012	1749	1	1	0	0	0	0	copy fasta	SEMG2	chr20	45216373	45229458
SENP1_chr12_48037897_48111079	1/1	c0001	1935	306	82	50	130	10	32	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0002	1935	74	9	18	37	4	6	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0003	1935	6	4	0	2	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0004	1935	2	0	0	2	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0005	1935	1	0	0	1	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0006	1935	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0007	1935	1	0	0	1	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0008	1935	1	0	1	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0009	1935	1	0	1	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	c0010	1935	1	0	0	1	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP2_chr3_185581295_185638551	1/1	c0001	1770	210	43	49	84	10	22	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	c0002	1770	143	40	27	52	4	20	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	c0003	1770	3	0	0	3	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	c0004	1770	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	c0005	1770	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	c0006	1770	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	c0007	1770	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP3_chr17_7556919_7576969	1/1	c0001	1725	433	90	80	204	18	39	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	c0002	1725	5	1	0	0	0	4	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	c0003	1725	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	c0004	1725	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	c0005	1725	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	c0006	1725	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	c0007	1725	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP5_chr3_196862920_196939714	1/1	c0001	2268	195	46	48	64	8	27	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0002	2268	86	30	12	27	5	12	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0003	2268	10	0	0	9	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0004	2265	4	0	0	4	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0005	2268	4	4	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0006	2268	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0007	2268	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0008	2268	1	0	0	0	1	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0009	2268	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0010	2268	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0011	2268	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	c0012	2268	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP6_chr6_75596880_75723281	0/0	c0001	3339	257	43	36	140	12	26	copy fasta	SENP6	chr6	75596880	75723281